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The Human Epigenetic Drug Database (HEDD) is a comprehensive web-based database for epigenetic drugs, which focuses on the storage and integration of epigenetic drug datasets that were obtained from laboratory experiments that is essential for understanding the mechanism of action of these epigenetic drugs at a systematic level.

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Entinostat

Category:HDACi
Cas Number:209783-80-2
Molecular Formula:C21H20N4O3
Molecular Weight:376.4085 g/mol
Smiles:C1=CC=C(C(=C1)N)NC(=O)C2=CC=C(C=C2)CNC(=O)OCC3=CN=CC=C3
Description:Entinostat is a synthetic benzamide derivative with potential antineoplastic activity. Entinostat binds to and inhibits histone deacetylase, an enzyme that regulates chromatin structure and gene transcription. This agent appears to exert dose-dependent effects in human leukemia cells including cyclin-dependent kinase inhibitor 1A (p21/CIP1/WAF1)-dependent growth arrest and differentiation at low drug concentrations; a marked induction of reactive oxygen species (ROS); mitochondrial damage; caspase activation; and, at higher concentrations, apoptosis. In normal cells, cyclin-dependent kinase inhibitor 1A expression has been associated with cell-cycle exit and differentiation.
synonyms:
Structure:
3D Conformer:3D View
Downlaod:Structure File Download (9.0KB)

Target list

IdDrug NameTargetPubmedIdCo-crystal Complex
839 EntinostatHistone deacetylase-like amidohydrolase (Alcaligenes sp. (strain DSM 11172) (Bordetella sp....)19457659
840 EntinostatHistone deacetylase (HDAC1 and HDAC2) (Homo sapiens (human))17941625
841 EntinostatHistone deacetylase 1 (HDAC1) (Homo sapiens (human))17941625
842 EntinostatHistone deacetylase 1 (HDAC1) (Homo sapiens (human))18370373
843 EntinostatHistone deacetylase (HDAC1 and HDAC2) (Homo sapiens (human))18370373
844 EntinostatHistone deacetylase 3 (Homo sapiens (human))18370373
845 EntinostatHistone deacetylase (Homo sapiens (human))18308563
846 EntinostatHistone deacetylase 4 (HDAC4) (Homo sapiens (Human))18308563
847 EntinostatHistone deacetylase 4 (HDAC4) (Homo sapiens (Human))18370373
848 EntinostatHistone deacetylase 8 (Homo sapiens (human))18370373
849 EntinostatHistone Deacetylase 4 (HDAC4) Mutant (H976Y) (Homo sapiens (human))18370373
850 EntinostatHistone deacetylase (Homo sapiens (human))18370373
851 EntinostatHistone Deacetylase 5 (HDAC5) (Homo sapiens (Human))18370373
852 EntinostatHistone deacetylase (Homo sapiens (human))18370373
853 EntinostatHistone deacetylase 1 (HDAC1) (Homo sapiens (human))18308563
854 EntinostatHistone Deacetylase (pfHDAC-1) (Plasmodium falciparum (isolate 3D7))19317450
855 EntinostatHistone deacetylase 3 (Homo sapiens (human))18308563
856 EntinostatHistone Deacetylase 4 (HDAC4) Mutant (H976Y) (Homo sapiens (human))18308563
857 EntinostatHistone deacetylase 1 (HDAC1) (Homo sapiens (human))12593661
858 EntinostatHistone deacetylase 1 (HDAC1) (Homo sapiens (human))14684344
Total Page:5 Page   of 5

Disease list

ConditionsDrug NameStatusNct NumberPhases
Leukemia
MDSs
5-Azacytidine
entinostat
CompletedNCT00101179Phase 1
CancerEntinostatCompletedNCT00020579Phase 1
Leukemia
multiple myeloma and plasma cell neoplasm
MDS
EntinostatCompletedNCT00015925Phase 1
Lymphoma
small intestine cancer
Entinostat
isotretinoin
CompletedNCT00098891Phase 1
Leukemia
myelodysplastic syndromes
5-Azacytidine
entinostat
CompletedNCT00101179Phase 1
Solid cancerEntinostat
docetaxel
TerminatedNCT00511576Phase 1
Leukemia
myelodysplastic syndromes
EntinostatCompletedNCT00324129Phase 1
Tumors
non-Hodgkin’s lymphoma
EntinostatCompletedNCT00323934Phase 1
Leukemia
myelodysplastic syndromes
EntinostatCompletedNCT00324194Phase 1
Lung cancer5-Azacytidine
entinostat
SuspendedNCT00387465Phase 1 2
Myelodysplastic syndrome
acute myelogenous leukemia
EntinostatCompletedNCT00324220Phase 1 2
TumorsEntinostat
gemcitabine
CompletedNCT00372437Phase 1 2
Colorectal cancer5-Azacytidine
entinostat
CompletedNCT01105377Phase 2
AML
MDS
5-Azacytidine
Entinostat
TerminatedNCT00666497Phase 2
Hodgkin and non-Hodgkin lymphoma5-Azacytidine
Entinostat
TerminatedNCT00543582Phase 2
MelanomaEntinostatCompletedNCT00185302Phase 2
Colorectal cancer5-Azacytidine
entinostat
CompletedNCT01105377Phase 2
Acute myeloid leukemia
(AML)jmyelodysplastic syndrome (MDS)
5-Azacytidine
Entinostat
TerminatedNCT00666497Phase 2
Hodgkin’s lymphomaEntinostatTerminatedNCT00358982Phase 2
Lymphocytic leukemia
chronic
EntinostatCompletedNCT00431873Phase 2
Total Page:2 Page   of 2

High-throughoutput Dataset

TitleDrug NameCategorySample typePMID
Genome-wide DNA methylation in MDS/secondary AML and de novo AML 5-Azacytidine
Entinostat
DNMTi
HDACi
Bone marrow aspirates from 14 patients with MDS, MDS-associated AML (AML with trilineage dysplasia), chronic myelomonocytic leukemia, or relapsed AML19652201
Combination of HDAC inhibitors and Azacytidine for Cancer Cell Selective Targeting of Esophageal Cancer Cells 5-Azacytidine
Entinostat
DNMTi
HDACi
human esophageal tumor cell lines (OE21 and OE33);human non-neoplastic esophageal epithelial cells (Het1A cells)25923331
Histone deacetylase inhibition decreases proliferation and potentiates the effect of ionizing radiation in atypical teratoid/rhabdoid tumor cells EntinostatHDACihuman atypical teratoid/rhabdoid tumor cells (BT-12 and BT-16)22156471
A transcriptome-based classifier to identify developmental toxicants by stem cell testing: design, validation, and optimization for histone deacetylase inhibitors Valproic acid
trichostatin A
Suberoylanilide hydroxamic acid
Belinostat
Panobinostat
Entinostat
HDACihuman embryonic stem cells (hESCs)26272509

Complex list

PDBIdDrug NameTargetmethodPubmedId

About

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The Human Epigenetic Drug Database (HEDD) is a comprehensive web-based database for epigenetic drugs, which focuses on integrating epigenetic drug studies based Omics data from high through experiments that is essential for understanding the mechanism of action of these epigenetic drugs at a systematic level.

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©2016 Group of Computational Epigenomics and Bioinformatics, College of Life Science, Jilin Normal University, China

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