HEDD

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The Human Epigenetic Drug Database (HEDD) is a comprehensive web-based database for epigenetic drugs, which focuses on the storage and integration of epigenetic drug datasets that were obtained from laboratory experiments that is essential for understanding the mechanism of action of these epigenetic drugs at a systematic level.

3-Deazaneplanocin A

Category:	HMTi
Cas Number:	102052-95-9
Molecular Formula:	C₁₂H₁₄N₄O₃
Molecular Weight:	262.26456 g/mol
Smiles:	C1=CN=C(C2=C1N(C=N2)C3C=C(C(C3O)O)CO)N
Description:	3-Deazaneplanocin A is a drug which acts as both a S-adenosylhomocysteine synthesis inhibitor and also a histone methyltransferase EZH2 inhibitor. Studies have shown that it has in vitro against a variety of different tumor cell lines. In studies on mice, 3-deazaneplanocin A was also found to be effective for the treatment of Ebola virus disease, apparently interfering with the Ebola viruses ability to block interferon production which usually allows it to evade immune responses.
synonyms:	3-Deazaneplanocin 102052-95-9 3-Deazaneplanocin A DZNep (1s,2r,5r)-5-(4-amino-1h-imidazo[4,5-c]pyridin-1-yl)-3-(hydroxymethyl)cyclopent-3-ene-1,2-diol (1S,2R,5R)-5-(4-aminoimidazo[4,5-c]pyridin-1-yl)-3-(hydroxymethyl)cyclopent-3-ene-1,2-diol c^Neplanocin A 3-Cyclopentene-1,2-diol,5-(4-amino-1H-imidazo[4,5-c]pyridin-1-yl)-3-(hydroxymethyl)-, (1S,2R,5R)- 3-Deaza-neplanocin 3-Deazaneplanocin, HCl salt (1S,2R,5R)-5-{4-amino-1H-imidazo[4,5-c]pyridin-1-yl}-3-(hydroxymethyl)cyclopent-3-ene-1,2-diol 3-Deazaneplanocin-A AC1Q4YRK 3-deazaneplanocin?DzNep? AC1L2J8T SCHEMBL863851 CHEMBL154745 SCHEMBL12280736 UNII-544SH4020S CTK4A0628 KST-1A0367 AVS-4275 3238AH ABP000454 AR-1A1487 ZINC21290121 AKOS005146283 544SH4020S CS-0357 RTX-011899 AN-34271 BC638758 HY-10442 NU000931 NU004233 FT-0081212 W-5529 3-Deazaneplanocin/DZNep/NSC617989/DZNepNSC617989 3B3-084562 (-)-1-[(1R,4R,5S)-3-(Hydroxymethyl)-4,5-dihydroxy-2-cyclopenten-1-yl]4-aminoimidazo[4,5-c]pyridine 3-Cyclopentene-1,2-diol, 5-(4-amino-1H-imidazo(4,5-c)pyridiny-1-yl)-3-(hydroxymethyl)-, (1S-(alpha,2alpha,5beta))-
Structure:
3D Conformer:	3D View
Downlaod:	Structure File Download (6.0KB)

Target list

Drug Name

Target

PubmedId

Co-crystal Complex

Disease list

Conditions	Drug Name	Status	Nct Number	Phases
breast cancer	5-Azacytidine Trichostatin A 3-Deazaneplanocin A			Preclinical study
healthy	sodium butyrate 3-Deazaneplanocin A			Preclinical study
small cell lung cancer (SCLC)	3-Deazaneplanocin A			Preclinical study
healthy	3-Deazaneplanocin A			Preclinical study
healthy	3-Deazaneplanocin A			Preclinical study
glioblastoma multiforme (GBM)cancer	3-Deazaneplanocin A			Preclinical study
breast cancer	3-Deazaneplanocin A 5-Aza-2'-deoxycytidine			Preclinical study
breast cancer	3-Deazaneplanocin A 5-Aza-2'-deoxycytidine			Preclinical study

High-throughoutput Dataset

Title	Drug Name	Category	Sample type	PMID
Combinatorial pharmacological approaches target EZH2-mediated gene repression in breast cancer cells	5-Azacytidine Trichostatin A 3-Deazaneplanocin A	DNMTi HDACi HMTi	human breast cancer cells (MCF-7)	19934278
Effect of butyrate and DZNep on hESC HSF-6	sodium butyrate 3-Deazaneplanocin A	HDACi HMTi	hESC HSF-6	22058289
Gene repression with H3K27me3 modification in human small cell lung cancer	3-Deazaneplanocin A	HMTi	clinical SCLC samples; normal tissue samples; small cell lung cancer (SCLC) cell lines; normal small airway epithelial cell (SAEC)?	23714854
Determinants of sensitivity to DZNep induced apoptosis in multiple myeloma cells	3-Deazaneplanocin A	HMTi	H929 cells	21720561
DMSO control and DZNep treated MOLM-14 cells	3-Deazaneplanocin A	HMTi	MOLM-14 cells?	21734239
DZNep-treated glioblastoma multiforme cancer stem cells	3-Deazaneplanocin A	HMTi	glioblastoma multiforme (GBM)cancer stem cells	19934320
Effects of DZNep and 5-Aza-CdR on gene expression in MCF7 cells	3-Deazaneplanocin A 5-Aza-2'-deoxycytidine	HMTi DNMTi	MCF7 cells	19509260
Effects of DZNep and 5-Aza-CdR on gene expression in MCF7 cells after 72 h treatment	3-Deazaneplanocin A 5-Aza-2'-deoxycytidine	HMTi DNMTi	MCF7 cells	19509260

Complex list

PDBId

Drug Name

Target

method

PubmedId

About

The Human Epigenetic Drug Database (HEDD) is a comprehensive web-based database for epigenetic drugs, which focuses on integrating epigenetic drug studies based Omics data from high through experiments that is essential for understanding the mechanism of action of these epigenetic drugs at a systematic level.